{"id":141884,"date":"2013-10-16T14:21:49","date_gmt":"2013-10-16T14:21:49","guid":{"rendered":"https:\/\/staging2.simonw59.sg-host.com\/biotea-rdfizing-pubmed-central-in-support-for-the-paper-as-an-interface-to-the-web-of-data\/"},"modified":"2022-05-26T13:43:18","modified_gmt":"2022-05-26T13:43:18","slug":"biotea-rdfizing-pubmed-central-in-support-for-the-paper-as-an-interface-to-the-web-of-data","status":"publish","type":"post","link":"https:\/\/force11.org\/post\/biotea-rdfizing-pubmed-central-in-support-for-the-paper-as-an-interface-to-the-web-of-data\/","title":{"rendered":"Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data"},"content":{"rendered":"<div class=\"ct_body\">\n<p><strong>Authors: <\/strong><\/p>\n<p>Leyla Garcia<br \/>\n\tCasey McLaughlin<br \/>\n\tAlexander Garcia<\/p>\n<h4 style=\"padding: 4px 0px;margin: 0px;border: none;font-size: 1.3em;font-family: Verdana, Arial, Helvetica, sans-serif;vertical-align: baseline;clear: both;line-height: 1.2em\">\n\tBackground<\/h4>\n<p style=\"padding: 0px;margin: 0px 0px 1em;border: 0px;font-size: 11px;font-family: Verdana, Arial, Helvetica, sans-serif;vertical-align: baseline;overflow: visible;clear: both;line-height: 17px\">The World Wide Web has become a dissemination platform for scientific and non-scientific publications. However, most of the information remains locked up in discrete documents that are not always interconnected or machine-readable. The connectivity tissue provided by RDF technology has not yet been widely used to support the generation of self-describing, machine-readable documents.<\/p>\n<h4 style=\"padding: 4px 0px;margin: 0px;border: none;font-size: 1.3em;font-family: Verdana, Arial, Helvetica, sans-serif;vertical-align: baseline;clear: both;line-height: 1.2em\">\n\tResults<\/h4>\n<p style=\"padding: 0px;margin: 0px 0px 1em;border: 0px;font-size: 11px;font-family: Verdana, Arial, Helvetica, sans-serif;vertical-align: baseline;overflow: visible;clear: both;line-height: 17px\">In this paper, we present our approach to the generation of self-describing machine-readable scholarly documents. We understand the scientific document as an entry point and interface to the Web of Data. We have semantically processed the full-text, open-access subset of PubMed Central. Our RDF model and resulting dataset make extensive use of existing ontologies and semantic enrichment services. We expose our model, services, prototype, and datasets at<a href=\"http:\/\/biotea.idiginfo.org\/\">http:\/\/biotea.idiginfo.org\/&nbsp;<\/a><a class=\"xpushbutton\" href=\"http:\/\/www.webcitation.org\/query.php?url=http:\/\/biotea.idiginfo.org\/&amp;refdoi=10.1186\/2041-1480-4-s1-s5\" style=\"padding: 0px 5px;margin: 0px;border-width: 1px;border-style: solid;font-style: italic;font-family: inherit;vertical-align: baseline;line-height: 14px;overflow: visible\" title=\"Archive copy of webpage\">webcite<\/a><\/p>\n<h4 style=\"padding: 4px 0px;margin: 0px;border: none;font-size: 1.3em;font-family: Verdana, Arial, Helvetica, sans-serif;vertical-align: baseline;clear: both;line-height: 1.2em\">\n\tConclusions<\/h4>\n<p style=\"padding: 0px;margin: 0px 0px 1em;border: 0px;font-size: 11px;font-family: Verdana, Arial, Helvetica, sans-serif;vertical-align: baseline;overflow: visible;clear: both;line-height: 17px\">The semantic processing of biomedical literature presented in this paper embeds documents within the Web of Data and facilitates the execution of concept-based queries against the entire digital library. Our approach delivers a flexible and adaptable set of tools for metadata enrichment and semantic processing of biomedical documents. Our model delivers a semantically rich and highly interconnected dataset with self-describing content so that software can make effective use of it.<\/p>\n<p style=\"padding: 0px;margin: 0px 0px 1em;border: 0px;font-size: 11px;font-family: Verdana, Arial, Helvetica, sans-serif;vertical-align: baseline;overflow: visible;clear: both;line-height: 17px\">&nbsp;<\/p>\n<p style=\"padding: 0px;margin: 0px 0px 1em;border: 0px;font-size: 11px;font-family: Verdana, Arial, Helvetica, sans-serif;vertical-align: baseline;overflow: visible;clear: both;line-height: 17px\">Journal: Journal of Biomedical Semantics 2013<\/p>\n<\/div>\n<p class=\"ct_meta\"><span class=\"ct_label\">Archive:<\/span>&nbsp;<a class=\"ct_archive\" target=\"_blank\" href=\"https:\/\/archive.force11.net\/node\/6361\" rel=\"noopener\">https:\/\/archive.force11.net\/node\/6361<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Authors: Leyla Garcia Casey McLaughlin Alexander Garcia Background The World Wide Web has become a dissemination platform for scientific and non-scientific publications. However, most of the information remains locked up in discrete documents that are not always interconnected or machine-readable. The connectivity tissue provided by RDF technology has not yet been widely used to support &#8230; <a title=\"Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data\" class=\"read-more\" href=\"https:\/\/force11.org\/post\/biotea-rdfizing-pubmed-central-in-support-for-the-paper-as-an-interface-to-the-web-of-data\/\" aria-label=\"More on Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data\">Read more<\/a><\/p>\n","protected":false},"author":206032,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"advgb_blocks_editor_width":"","advgb_blocks_columns_visual_guide":"","footnotes":""},"categories":[151],"tags":[],"force11":[],"blog_series":[],"working_group":[],"class_list":["post-141884","post","type-post","status-publish","format-standard","hentry","category-news"],"acf":[],"author_meta":{"display_name":"Alex Garcia-castro","author_link":"\/members\/alex-garcia-castro"},"featured_img":null,"coauthors":[],"tax_additional":{"categories":{"linked":["<a href=\"https:\/\/force11.org\/category\/news\/\" class=\"advgb-post-tax-term\">News<\/a>"],"unlinked":["<span class=\"advgb-post-tax-term\">News<\/span>"]}},"comment_count":"0","relative_dates":{"created":"Posted 12 years ago","modified":"Updated 4 years ago"},"absolute_dates":{"created":"Posted on 16 Oct 2013","modified":"Updated on 26 May 2022"},"absolute_dates_time":{"created":"Posted on 16 Oct 2013 14:21","modified":"Updated on 26 May 2022 13:43"},"featured_img_caption":"","series_order":"","_links":{"self":[{"href":"https:\/\/force11.org\/wp-json\/wp\/v2\/posts\/141884","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/force11.org\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/force11.org\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/force11.org\/wp-json\/wp\/v2\/users\/206032"}],"replies":[{"embeddable":true,"href":"https:\/\/force11.org\/wp-json\/wp\/v2\/comments?post=141884"}],"version-history":[{"count":0,"href":"https:\/\/force11.org\/wp-json\/wp\/v2\/posts\/141884\/revisions"}],"wp:attachment":[{"href":"https:\/\/force11.org\/wp-json\/wp\/v2\/media?parent=141884"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/force11.org\/wp-json\/wp\/v2\/categories?post=141884"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/force11.org\/wp-json\/wp\/v2\/tags?post=141884"},{"taxonomy":"force11","embeddable":true,"href":"https:\/\/force11.org\/wp-json\/wp\/v2\/force11?post=141884"},{"taxonomy":"blog_series","embeddable":true,"href":"https:\/\/force11.org\/wp-json\/wp\/v2\/blog_series?post=141884"},{"taxonomy":"working_group","embeddable":true,"href":"https:\/\/force11.org\/wp-json\/wp\/v2\/working_group?post=141884"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}